These are the pieces of software and data the the server tasks (psipred, genthreader etc...) need to run

Software packages in /webdata/binaries/current#

ape-1.0
blast - simlink to the latest blast package
blast-2.2.19
coils
disopred
dompred
dssp
EMBOSS-6.3.1
EMBOSS-6.3.1_bios - as compiled against the biosX machines EMBOSS-6.5.7
ff_clust
ffpred
fragfold
GenAlignmentHandler
HHblits
hs_pred
jre1.6.0_34
libsvm-3.11
mafft
mempack
memsat-svm
memsat-svm-pore
metsite
modeller-9.10
mtx2con
mtx2cons
ncbi-blast-2.2.25+-src
netNglyc-1.0a
netOglyc-3.1d
NewPredServer
psipred
psort
sap
SeqFeat
signalp-4.0
svm_light-6.02
T-COFFEE - simlink to the latest T-COFFEE
T-COFFEE_distribution_Version_7.95 WoLFPSORT_package_v0.2

Data files which are currently installed on /webdata/data/#

cath_chain_tdb
cath_pdb
cath_tdb - simlink to the latest cath domain tdb (cath_tdb_3_3)
cath_tdb_3_3
current dssp
pdb
scop_pdb
tdb - simlink to latest tdb (cath_chain_tdb)

Data files for sofware currently installed on /webdata/data/current/, mostly the data files from these downloadables#

blast
CSA
disopred
dompred
hblits
metsite
psipred

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« This page (revision-1) was last changed on 11-Feb-2013 18:08 by UnknownAuthor