95 Z99 NIO MES ACM CL PEPTIDE_A AAE
96 Z99 GOL ACM AAE NIO MES CL PEPTIDE_A
97 Z99 NIO MES GOL ACM PEPTIDE_A
118 Z99 BGC NIO MG GOL CL PEPTIDE_A AAE
119 Z99 NIO MG ACM PEPTIDE_A AAE
167 Z99 GAL NIO MES GOL ACM CL PEPTIDE_A

Seems reasonable.

Domenico:
Refined consensus from the analysis of PDMsum contacts from Genthreader's certain hits and valid ligands - most of them are peptides which makes sense - Tyr34, Ser95, Ser96, Ser97, Val116, Glu117, Pro118, Ala119, Phe167, Thr247 and Gly248. They all colocalize in the manual 3D model. Unfortunately sequence conservation does not help in this case, because only Ser97 achieves a reasonable score - equal to 7.
We should submit the initial list of residues, if we want to be conservative.

PFRMAT FN
TARGET T0528
AUTHOR 7656-5034-1890
REMARK Sequence consensus of contacts between homologous structures and ligands
METHOD pGenTHREADER and PDBSum and CSA data mining
MODEL 1
Binding site: 95, 96, 97, 118, 119, 167
END

Add new attachment

Only authorized users are allowed to upload new attachments.
« This page (revision-1) was last changed on 28-May-2010 14:25 by UnknownAuthor