Domenico:
InterproScan detects a PAS_3 PFAM domain, which is known to bind a number of prosthetic groups, including haem and FAD. The following residues come from the consensus of at least four (five, actually) out of nine certain and high confidence hits (as labelled on the page with Bioserf results) mostly in complex with FAD or FMN: Trp21, Leu23, Ser27, Glu51, Asp52, Ala53, Phe55, Gln56, Arg57, Leu70, Asp71, Val74, Tyr84, Ile86, Leu96, Glu98, Asn100, Leu113, Trp114, Gly115 and Val117.

PFRMAT FN
TARGET T0600
AUTHOR 7656-5034-1890
REMARK Sequence consensus of contacts between homologous structures and ligands
METHOD pGenTHREADER and PDBSum and CSA data mining.
MODEL 1
Binding site: 21, 23, 27, 51, 52, 53, 55, 56, 57, 70, 71, 74, 84, 86, 96, 98, 100, 113, 114, 115, 117
END

This represents a substantial proportion of the residues in the target, though they all colocalize in our manual 3d model. Maybe we could double-check this prediction with the conservation scores from David's tool?

Add new attachment

Only authorized users are allowed to upload new attachments.
« This page (revision-1) was last changed on 12-Jul-2010 12:56 by UnknownAuthor